| Title: | Meta-Package for Compositional Data Analysis |
|---|---|
| Description: | Meta-package for compositional data analysis. It attaches the main stable packages of the 'coda' ecosystem, currently 'coda.base' and 'coda.plot', and provides helper tools to install development extensions from 'GitHub'. |
| Authors: | Marc Comas-Cufí [aut, cre] (ORCID: <https://orcid.org/0000-0001-9759-0622>) |
| Maintainer: | Marc Comas-Cufí <[email protected]> |
| License: | GPL (>= 3) |
| Version: | 0.1.3 |
| Built: | 2026-05-19 10:01:25 UTC |
| Source: | https://github.com/cran/coda.pack |
Development repositories in the coda ecosystem
coda_dev_repos()coda_dev_repos()
A character vector. Each element is a GitHub repository identifier
of the form "owner/repository" corresponding to a development package
in the coda ecosystem.
coda_dev_repos()coda_dev_repos()
Returns a data frame with the packages currently considered part of the
coda ecosystem and their installation source.
coda_packages()coda_packages()
A data frame with one row per package and two columns:
Package name.
Source from which the package can be installed, currently
either "CRAN" or "GitHub".
The returned object is of class data.frame.
coda_packages()coda_packages()
Installs the development extensions of the coda ecosystem from GitHub.
install_coda_dev(upgrade = "never")install_coda_dev(upgrade = "never")
upgrade |
Upgrade policy passed to |
Currently, this function installs:
coda.count
Invisibly returns a character vector with the GitHub repositories
that were passed to remotes::install_github(). Each element is of the
form "owner/repository".
Updates installed packages that belong to the coda ecosystem.
CRAN packages are updated only if a newer version is available on CRAN.
GitHub packages are updated from their development repositories.
update_coda_packages( installed_only = TRUE, ask = FALSE, repos = NULL, quiet = FALSE )update_coda_packages( installed_only = TRUE, ask = FALSE, repos = NULL, quiet = FALSE )
installed_only |
Logical. If |
ask |
Logical. Passed to |
repos |
Character vector of CRAN repositories passed to
|
quiet |
Logical. If |
By default, only already installed packages are considered. This avoids installing optional packages that are part of the ecosystem but not yet present in the user's library.
Invisibly returns a list with components:
Character vector of CRAN packages updated.
Character vector of GitHub packages processed for update.
Character vector of ecosystem packages skipped because they
were not installed and installed_only = TRUE.